This command sets the parameters of the Markov chain Monte Carlo (MCMC) analysis without actually starting the chain. This command is identical in all respects to Mcmc, except that the analysis will not start after this command is issued. For more details on the options, check the help menu for Mcmc.
Parameter Options Current Setting ----------------------------------------------------- Seed <number> 1115997956 Swapseed <number> 1115997956 Ngen <number> 1000000 Nruns <number> 2 Nchains <number> 4 Temp <number> 0.200000 Reweight <number>,<number> 0.00 v 0.00 ^ Swapfreq <number> 1 Nswaps <number> 1 Samplefreq <number> 100 Printfreq <number> 100 Printall Yes/No Yes Printmax <number> 8 Mcmcdiagn Yes/No Yes Diagnfreq <number> 1000 Minpartfreq <number> 0.10 Allchains Yes/No No Allcomps Yes/No No Relburnin Yes/No Yes Burnin <number> 0 Burninfrac <number> 0.25 Stoprule Yes/No No Stopval <number> 0.01 Filename <name> temp.out.<p/t> Startingtree Random/User Random Nperts <number> 0 Savebrlens Yes/No Yes Ordertaxa Yes/No No -----------------------------------------------------