This command is used in a data block to define the number of taxa and characters. The correct usage is
dimensions ntax=<number> nchar=<number>
The dimensions must be the first command in a data block. The following provides an example of the proper use of this command:
begin data; dimensions ntax=4 nchar=10; format datatype=dna; matrix taxon_1 AACGATTCGT taxon_2 AAGGATTCCA taxon_3 AACGACTCCT taxon_4 AAGGATTCCT ; end;
Here, the dimensions command tells MrBayes to expect a matrix with four taxa and 10 characters.